Cholinergic signals, endogenously by acetylcholine and exogenously by nicotine, act on nicotinic acetylcholine (nAChRs) receptors and may modulate cellular activity, proliferation and death. Although neuronal cholinergic signaling is well studied epithelial cholinergic signals and their role in cancer biology remain relatively unexplored. Understanding how sythesis and metabolism of acetylcholinesterase, the enzyme that degrades acetycholine, as well as presence/absence of nAChRs affect the cancer cell signaling can provide novel leads in cancer research and therapy.
Herein Dr. Konu will present results obtained through in silico, in vitro and in vivo approaches on the role of cholinergic signals in cancer progression. Her group recently established a significant proliferative and prognostic role for CHRNA5, the alpha 5 subunit of the pentameric nAChRs, in breast cancer. Moreover, they have developed zebrafish xenograft models to test effects of microenvironment and novel drugs against liver cancer cells.
Translational control of cancer and stromal cells – Dr. Ola Larsson
Abstract Estrogen receptor alpha (ERα) activity is associated with increased cancer cell proliferation. Studies aiming to understand the impact of ERα on cancer-associated phenotypes have largely been limited to its transcriptional activity. Herein, we demonstrate that ERα coordinates its transcriptional output with selective modulation of mRNA translation. Importantly, translational perturbations caused by depletion of ERα largely manifest as “translational offsetting” of the transcriptome, whereby amounts of translated mRNAs and corresponding protein levels are maintained constant despite changes in mRNA abundance. Transcripts whose levels, but not polysome association, are reduced following ERα depletion lack features which limit translation efficiency including structured 5’UTRs and miRNA target sites. In contrast, mRNAs induced upon ERα depletion whose polysome association remains unaltered are enriched in codons requiring U34-modified tRNAs for efficient decoding. Consistently, ERα regulates levels of U34-modifying enzymes and thereby controls levels of U34-modified tRNAs. These findings unravel a hitherto unprecedented mechanism of ERα-dependent orchestration of transcriptional and translational programs that may be a pervasive mechanism of proteome maintenance in hormone-dependent cancers. Date: 09/04/2021 – 17.00 GMT+3
A tutorial: Transcriptome wide analysis of translational efficiency – İnci Şevval Aksoylu (PhD Student)
Public databases are treasure troves of sequence data. Given the small genome size of viruses, they represent the entity with one of the largest number of full-genome sequences. Genetic diversity has been one of the mechanisms by which viruses evade the host immune response. Viruses, in particular those of RNA genetic material, mutate rapidly and thus contribute a large number of viral variants. In this talk, we describe the viral diversity dynamics at the protein sequence level and the implication to vaccine design.
RSG-Turkey is a member of The International Society for Computational Biology (ISCB) Student Council (SC) Regional Student Groups (RSG). We are a non-profit community composed of early career researchers interested in computational biology and bioinformatics.